Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M33 Chr20p11-13,q11-13_UniqueNum	BreastC_M33 Chr20p11-13,q11-13_pVal	BreastC_M33 Chr20p11-13,q11-13_Unique	ColonC_M4 CellCycle SMARCA2-Correlated_UniqueNum	ColonC_M4 CellCycle SMARCA2-Correlated_pVal	ColonC_M4 CellCycle SMARCA2-Correlated_Unique
BIDUS_METASTASIS_UP	0		0.000104092675935	9	0.00020818535187	ADNP|AURKA|CSE1L|GID8|NDRG3|PRELID3B|RAB22A|RAE1|YTHDF1	50	2.3919214876e-16	AMD1|ATP6V0A2|BUB1|C5ORF22|CAND1|CCNB1|CCNY|CDK1|CDYL|CENPA|CRY1|DDX21|DEPDC1|DHFR|DSP|ECT2|GAS2L3|GMNN|HBS1L|HNRNPH3|HNRNPR|HSF2|KIF11|KLHL23|LARP4|LMNB1|MAPKAPK5|MCM10|MNS1|MPHOSPH9|MRPL42|NAP1L1|NCAPH|NCBP2|NEMP1|ODC1|PHF10|PPP2CA|PTGES3|RACGAP1|RFC5|RRM2|RRN3|SMC4|SNRNP27|SRSF9|TRA2B|TYMS|WAC|WBP11
CAIRO_HEPATOBLASTOMA_CLASSES_UP	1	IMP4	8.91934311705e-06	17	1.78386862341e-05	AHCY|AURKA|CPNE1|CSE1L|CSNK2A1|DDX27|EIF2S2|ERGIC3|MAPRE1|NOP56|OSBPL2|PSMF1|PTPRA|RPN2|RPS21|SNRPB|SNX5	117	5.30628982697e-30	ACP1|AGPS|ALDH18A1|AMD1|ATIC|ATP2B1|AURKB|BCCIP|BUB1|BUB3|CAD|CAPRIN1|CCNB1|CCT2|CCT4|CCT7|CDC25C|CDK1|CDK4|CDKAL1|CENPA|CHAF1A|DDX1|DDX18|DNAJC9|DNAJC10|DTYMK|ECT2|EIF2B4|EIF4B|EIF5B|EMG1|EPRS|FAM136A|FASTKD1|FBXO5|FXR1|GART|GCN1|GCSH|GPN1|GTF3C2|GTF3C3|GTPBP4|HDAC2|HJURP|HMMR|HNRNPR|HSP90AB1|HSPA13|HSPD1|KIF11|KIF15|KIF18A|KIF18B|KIF20A|KMT5A|KNTC1|KPNA2|LDAH|LRPPRC|MAPKAPK5|MCM6|MCM10|MDN1|METTL8|MIS18A|MKI67|MMS19|MSH2|NCAPD2|NCBP2|NCL|NDC80|NOLC1|NPM3|ODC1|ORC4|PDCD11|PDIA4|PDIA6|PDSS1|PHB2|PMS1|PNO1|POLR2D|PPA1|PPP1CC|PUS1|R3HDM1|RAD51AP1|RAN|RPL22|RRM2|SAP130|SEC23IP|SERBP1|SINHCAF|SLC25A3|SMC4|SRSF9|SSB|SUPT3H|THAP4|TIMELESS|TMPO|TPI1|TTK|UNC93A|USP10|VDAC2|WARS2|WDR12|XRCC5|YBX3|ZC3H15|ZFR
GRADE_COLON_AND_RECTAL_CANCER_UP	1	EXOC2	2.51236558687e-07	13	4.7683272594e-07	AHCY|AURKA|CSTF1|DDX27|DPM1|EIF2S2|EIF6|MRGBP|NOP56|OSER1|RTFDC1|SNRPB|TTPAL	43	2.56403914339e-08	ATIC|BPHL|CCNB1|CCT7|CCT8|CDK1|CEP57L1|DDX1|DHX9|EIF4B|EPRS|GCSH|GEMIN6|GLO1|HELLS|HJURP|HNRNPA1|HSPE1|KNTC1|MDC1|METTL5|MTHFD2|PA2G4|PDXK|PNPT1|POLQ|POLR2D|PPA1|PSMB1|PSMD14|PTCD3|RAN|RFC5|RRM2|SEPHS1|SMPD4|SSB|SYNCRIP|TFB1M|TIMELESS|TPI1|UBE2N|WDR75
GRADE_COLON_CANCER_UP	1	UBXN4	9.84399930261e-05	20	5.48383133792e-05	ADNP|ASCL2|BOLA2|CPNE1|CRLS1|DDX27|DPM1|EIF6|ERGIC3|NCOA6|NOP56|NSFL1C|PSMA7|RAB22A|RALY|SNRPB|STAU1|STX16|TMEM230|ZNF343	78	0.000142041672673	ACTR3|ADI1|AGPS|ANAPC5|ANKRD16|ARPC3|ATIC|ATP13A3|ATXN7L3B|BMS1|CAND1|CCDC18|CCT2|CCT8|CDC123|CENPO|CNPY2|COPS7A|CSTB|DHX9|DNAJC21|EPRS|GDI2|GNL3L|GTF2H5|HAGHL|HIST1H4C|HMGN1|HNRNPA1|HSP90B1|HSPE1|KCMF1|KLHL12|LMNB1|LPCAT3|LRRC58|MAIP1|MARCH9|MLEC|MRPL51|NCL|NDUFV3|NET1|NIFK|NOC4L|ODC1|PALB2|PCBP2|PDIA4|PDXK|PGAM5|PPA1|PPIF|PTCD3|PUS1|RBM17|RFC5|RNF7|RPL22|RRM2|RTN4IP1|SEPHS1|SEPT2|SF3B6|SMPD4|SNRPG|SUB1|SYNCRIP|TMBIM6|TMEM165|TPI1|TROAP|TUBA1B|U2AF1|UBE2N|USP5|ZMYM6|ZNF511
GSE19888_CTRL_VS_A3R_INHIBITOR_TREATED_MAST_CELL_UP	0		0.000334490377654	8	0.000668014624328	COMMD7|CSE1L|DYNLRB1|EIF2S2|ITPA|MGME1|ROMO1|SNRPB	32	9.66130979436e-07	ALG10|CDK2|CEP57L1|CKAP2L|COQ3|COX5B|EIF2B1|GEN1|HAT1|HAUS8|HNRNPF|HSPA14|KIF1BP|KIF20A|KIF20B|KLHL23|KNTC1|KPNA2|LRRC58|MDH1|METAP2|NDUFA9|NDUFB8|PSAT1|RPF2|SNRPF|SPC24|SRSF3|STIL|SUV39H2|TMEM177|XRCC5
GSE43863_TFH_VS_LY6C_INT_CXCR5POS_EFFECTOR_CD4_TCELL_UP	3	IMP4|KRAS|UBXN4	0.000767090744828	5	0.000737741011592	DDRGK1|NOP56|PDRG1|PRELID3B|SNRPB2	22	0.000796440478064	ARF1|ARF3|ATE1|CSTB|FOXN2|GDF11|HSPD1|KANSL2|NDUFAF4|NIFK|PDXK|PPP1R7|PPRC1|PUS1|RRP12|SAR1A|SFT2D1|SIAH2|TMEM165|USP10|WAC|WDR75
Human Breast_Dairkee04_479genes (15260889-TableS2a)	0		1.54481869822e-06	15	2.92727832363e-06	AHCY|AURKA|CPNE1|CSTF1|CTNNBL1|GSS|IDH3B|MANBAL|MAPRE1|MRGBP|OSER1|RAE1|RALY|RNF114|VAPB	51	1.62359072803e-07	ADI1|ADK|ANLN|ARG2|AURKB|CDC123|CDCA3|CDK1|CDK2|CDK4|CENPA|CEP55|CHAF1A|CHAF1B|CS|DEPDC1|DHFR|DONSON|DTYMK|FANCD2|FOXM1|GMNN|GPN1|HAT1|HSPD1|KPNA2|MMAB|MRPL39|MRPS35|MTHFD2|NDUFA10|NUDT3|NUDT5|ORC6|PA2G4|PGAM5|PTTG1|PWP1|RAB35|RRM2|RRP1|SEPHS1|SHMT2|SRSF10|TEAD4|TFAM|TMPO|TSN|TYMS|USP1|ZWINT
Human Breast_Dairkee04_681genes (15260889-SuppTable2)	0		0.00017185097022	15	0.000135157855679	AHCY|AURKA|CPNE1|CSTF1|CTNNBL1|GSS|IDH3B|MANBAL|MAPRE1|MRGBP|OSER1|RAE1|RALY|RNF114|VAPB	54	0.000208544084762	ACP1|ADI1|ADK|ANLN|ARG2|AURKB|CDC123|CDCA3|CDK1|CDK2|CDK4|CENPA|CEP55|CHAF1A|CHAF1B|CS|DEPDC1|DHFR|DONSON|DTYMK|FANCD2|FOXM1|GMNN|GPN1|HAT1|HSPD1|KPNA2|MMAB|MRPL39|MRPS35|MTHFD2|NDUFA10|NUDT3|NUDT5|ORC6|PA2G4|PGAM5|PLEKHA5|PTTG1|PWP1|RAB35|RRM2|RRP1|SEPHS1|SFXN1|SHMT2|SRSF10|TEAD4|TFAM|TMPO|TSN|TYMS|USP1|ZWINT
Human Breast_Wirapati08_355genes_AURKA_Module (18662380-S3-AURKA)	0		1.64678366171e-07	16	3.29356732342e-07	AURKA|CABLES2|CSE1L|CSTF1|DPM1|MRGBP|NOP56|OSBPL2|PFDN4|PRELID3B|PSMA7|RAB22A|RAE1|SS18L1|TAF4|YTHDF1	76	2.48431808764e-21	ANLN|ARL6IP1|AURKB|BUB1|CCNB1|CDC7|CDC25C|CDCA3|CDK1|CENPA|CENPK|CENPW|CEP55|CHAF1B|DEPDC1|DEPDC1B|DNAJC9|DONSON|DTYMK|ECT2|ESPL1|FAM136A|FBXO5|FOXM1|GMNN|GTPBP4|HELLS|HJURP|HMMR|IQGAP3|KIF11|KIF15|KIF18A|KIF20A|KNTC1|KPNA2|LMNB1|MCM6|MCM10|MIS18A|MKI67|MTFR2|MTHFD2|NCAPH|NDC80|NEMP1|NOP2|ORC6|PARPBP|PDSS1|PIMREG|PNPT1|POLQ|PRIM1|PSMD14|PTTG1|RACGAP1|RAD51AP1|RAD54B|RRM2|SHCBP1|SMC4|SNRPF|SNRPG|SPC24|SPC25|STIL|TIMELESS|TPI1|TROAP|TTK|TUBA1B|TYMS|UNG|XPOT|ZWINT
Human Breast_Zhang09_81genes (19336569-SuppTable3)	0		0.000443393623015	5	0.000812033077587	CDK5RAP1|CSTF1|PPP1R3D|RAE1|RTFDC1	15	7.47541684426e-05	ANXA4|ARF1|ARL6IP1|ASF1A|COX5B|EIF5B|FAM168B|HDAC2|METTL5|NADK2|PREP|RAD54B|RPLP0|SMC4|TBC1D15
Human Lymphoma_Martinez-Climent03_431genes (12406872-Table4)	0		0.000488608255421	9	0.00095800163286	AHCY|BCL2L1|GSS|MAPRE1|PSMA7|PTPRA|RALY|SNRPB|TOP1	35	1.92148779813e-05	AFDN|ANXA7|C2CD5|CDK2|CDK4|CHUK|COPS7A|CS|DDX21|EIF4B|FKBP4|FOXM1|GDI2|GLO1|HSPD1|KPNA2|MDH1|MLF2|NEDD1|NNT|NR2C1|OAT|PA2G4|PPIF|PRDX3|PRKAG1|RAP1B|SHMT2|SMPD2|TEC|TPI1|TTK|UROS|VDAC2|ZWINT
Human Viral_Cairo08_982genes (19061838-TableS7)	1	IMP4	0.000127388830077	18	0.000254777660155	AHCY|AURKA|BLCAP|CPNE1|CSE1L|CSNK2A1|DDX27|EIF2S2|ERGIC3|MAPRE1|NOP56|OSBPL2|PSMF1|PTPRA|RPN2|RPS21|SNRPB|SNX5	124	1.0572149529e-21	ACP1|ADIPOR2|AGPS|ALDH18A1|AMD1|ANXA4|ARL6IP5|ATIC|ATP2B1|AURKB|BCCIP|BUB1|BUB3|CAD|CAPRIN1|CCNB1|CCT2|CCT4|CCT7|CDC25C|CDK1|CDK4|CDKAL1|CENPA|CHAF1A|DDX1|DDX18|DNAJC9|DNAJC10|DTYMK|ECT2|EIF2B4|EIF4B|EIF5B|EPRS|FAM136A|FASTKD1|FBXO5|FXR1|GART|GCN1|GCSH|GPN1|GTF3C2|GTF3C3|GTPBP4|HDAC2|HJURP|HMMR|HNRNPR|HSP90AB1|HSPA13|HSPD1|KIF11|KIF15|KIF18A|KIF20A|KMT5A|KNTC1|KPNA2|LDAH|LRPPRC|MAPKAPK5|MCM6|MCM10|MDN1|METTL8|MIS18A|MKI67|MMS19|MSH2|NCAPD2|NCBP2|NDC80|NOLC1|NPM3|ODC1|ORC4|PACRG|PDCD11|PDIA4|PDIA6|PDSS1|PEBP1|PHB2|PHLDA1|PMS1|PNO1|POLR2D|PPA1|PPP1CC|PREB|PTPRB|PUS1|R3HDM1|RAD51AP1|RAN|RPL22|RPLP0|RRM2|SAP130|SEC23IP|SHB|SINHCAF|SLC25A3|SMC4|SPTBN1|SRSF9|SSB|SUPT3H|THAP4|TIMELESS|TMPO|TPI1|TTC9|TTK|USP10|VDAC2|WARS2|WDR12|XRCC5|YBX3|ZC3H15|ZFR
OUELLET_OVARIAN_CANCER_INVASIVE_VS_LMP_UP	1	UBXN4	0.000886571294021	5	0.00086191893448	CSE1L|DPM1|MAPRE1|RALY|SNRPB2	16	0.000911223653562	ACP1|ATP13A3|BTG3|CD9|CSTB|EPRS|FH|GLO1|HMGN1|LRPPRC|MDH1|NDUFS1|OAT|SRSF9|SUMO1|ZNF146
PUJANA_BRCA2_PCC_NETWORK	0		1.5308259523e-06	16	3.0616519046e-06	AURKA|CSNK2A1|CSTF1|IDH3B|MAPRE1|NINL|PFDN4|RAE1|RALY|RBCK1|SNRPB|SYCP2|TAF4|TOP1|TTI1|UCKL1	78	8.55455922731e-18	ADK|AGPS|ARHGAP19|ASF1A|ATAD2B|AURKB|BUB1|BUB3|CAD|CCNB1|CDC7|CDC25C|CDK1|CENPA|CHAF1A|CNOT9|DDX23|DHFR|DNA2|DNAJC9|DTYMK|ESPL1|FASTKD2|FOXM1|FRAT2|HDAC4|HLTF|HMGN1|HMGN4|HMMR|HSF2|KATNA1|KIF11|KIF20B|KNTC1|LCT|LMNB1|MCM6|MKI67|MPHOSPH9|MSH2|NCAPD2|NCAPH|NCK1|NDC80|NEMP1|NFYA|NFYB|NR2C1|NUDT21|PPP1CC|PRIM1|PRPF4B|PTTG1|RAD51AP1|RECQL|RFC5|RIF1|RPP30|RRM2|SEPHS1|SMC3|SMC4|SPC25|SRSF3|SRSF10|STIL|TIAL1|TIMELESS|TMPO|TROAP|TTK|TYMS|UNG|USP1|XRCC5|ZNF184|ZWINT
PUJANA_CHEK2_PCC_NETWORK	1	KRAS	2.29769355159e-05	19	4.59538710318e-05	ADNP|AURKA|BOLA2|CSE1L|CSNK2A1|DPM1|EIF2S2|IDH3B|NOP56|PFDN4|RBCK1|RPS21|SNRPB|SNRPB2|TAF4|TOP1|TTI1|YWHAB|ZNF337	151	2.23259737135e-38	ANAPC5|ARHGAP19|ASF1A|ATIC|ATP13A3|AURKB|BUB1|BUB3|BZW1|C1D|CAD|CCNB1|CCNC|CCT2|CCT4|CCT8|CDC7|CDC123|CDK1|CDK4|CEBPZ|CENPA|CHAF1A|CHUK|CNOT9|CTR9|DDX18|DDX21|DDX51|DHFR|DHX9|DNA2|DNAJC9|DTYMK|DUSP11|EIF5B|EPB41|ERCC3|ESPL1|FOXM1|GCSH|GPN1|HAT1|HDAC2|HIST1H4C|HMGN1|HMGN4|HMMR|HNRNPF|HNRNPR|HSPD1|HSPE1|IMMT|KATNA1|KIF11|KIF20B|KLHL23|KNTC1|KPNA2|LARP4|LCT|LMNB1|MAPKAPK5|MCM6|METAP2|MKI67|MPHOSPH9|MPHOSPH10|MSH2|MTHFD2|MTX2|NAP1L1|NCAPD2|NCBP2|NCK1|NCL|NDC80|NDUFB3|NEMP1|NFYB|NOLC1|NOP2|NPM3|ODC1|PA2G4|PARG|PCMT1|PDCD10|PNO1|POP5|PPIG|PPP1CC|PRDX3|PRKRA|PSMD9|PTTG1|PWP1|RAD51AP1|RAN|RANBP9|RECQL|RFC5|RIF1|RNASEH1|RRM2|RRP1B|SAR1A|SART3|SEPHS1|SERBP1|SHMT2|SMC3|SMC4|SMNDC1|SNRPF|SNRPG|SNX4|SPC25|SRSF3|SRSF9|SRSF10|SSB|STARD7|STIL|SUMO1|SYNCRIP|TAF5|TBP|TDG|TFAM|TIMELESS|TMPO|TRA2B|TRIAP1|TROAP|TTK|TUBA1B|TYMS|U2AF1|UBE2E1|UBE2N|UNG|USP1|WDR43|WTAP|XRCC5|YAF2|ZBTB24|ZC3H15|ZNF195|ZWINT
RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP	1	UBXN4	6.13161552715e-06	19	1.22632310543e-05	ARFGEF2|AURKA|BCL2L1|CSE1L|DDX27|DPM1|EIF2S2|MKKS|NOP56|OSER1|PDRG1|PFDN4|RAE1|RALGAPB|SNRPB|STX16|TOP1|TRIB3|TTPAL	139	2.697269763e-35	ACP1|ACTR2|ADK|AGPS|ANLN|ARNTL2|ASCC3|ATG5|ATP2B1|ATP13A3|AURKB|BRAP|BRWD1|BUB3|BZW1|C18ORF54|CAPRIN1|CCNB1|CCT2|CDC40|CDK1|CDYL|CEBPZ|CENPA|CEP55|CEP63|CIP2A|COMMD2|CPSF3|DCUN1D1|DENR|DEPDC1|DHX9|DNAJC10|DNM1L|DSCR3|ECT2|EIF4G2|EIF5B|EPRS|ERCC8|ERLIN1|FAM168B|FBXO45|FOXM1|FXR1|GART|GAS2L3|GFM2|GLRX3|GOLT1B|GTPBP4|HMMR|HPS3|HSPA13|HSPD1|IGF2BP3|IL1RAP|INHBE|KIAA1551|KIF11|KIF18A|KIF20B|KPNA2|KPNA4|LMAN1|MAPK14|METTL5|MFN1|MIS18A|MITD1|MOB4|MPHOSPH10|MRPL42|MTFR2|MTHFD2|MTPAP|NAA50|NCBP2|NDC80|NEMP1|NIFK|NMD3|NUDT21|NUP107|ORC6|PGM3|PMS1|PNPT1|PRIM2|PRKAA1|PRPF4B|PRPF40A|PSAT1|PSMD14|PTPN11|RACGAP1|RAD51AP1|RARS2|RECQL|RIF1|RNGTT|RPAP3|RPF2|RSF1|SCYL2|SGO2|SHMT2|SLC7A11|SLC38A1|SLC38A2|SMC3|SMC4|SMC6|SSB|SSFA2|STAMBPL1|STC2|STIL|STRN|TIGAR|TMPO|TRUB1|TTK|TWF1|TXNDC9|TXNRD1|USP1|USP10|USP16|USP47|VTA1|WAPL|WDR75|XPOT|ZBTB11|ZNF146|ZNF184|ZNF317
SHEN_SMARCA2_TARGETS_UP	0		7.0058541838e-06	15	1.40117083566e-05	ARFGEF2|CSE1L|DPM1|ELMO2|MKKS|NCOA6|NSFL1C|PPP1R3D|PSMF1|RAB22A|RALGAPB|RNF114|SNX5|STAU1|TMEM230	72	1.10031045169e-14	ABI1|ACTR3|ANXA7|ARMT1|ATF1|BUB3|C6ORF120|CAND1|CAPN7|CRYZL1|CTR9|DAZAP2|DDX1|ERCC3|FAM208B|GTF2H5|GTF3C3|HAT1|HIBCH|HLTF|HMGN4|HNRNPH3|IDE|KIF1BP|LANCL1|METTL5|MOB4|MTO1|NFU1|NFYB|NHLRC2|NNT|NSMCE4A|NUDT21|ORC4|PCMT1|PCNP|PEX3|PRKRA|PTPN11|RAB1A|RAB21|RALB|RDH14|REV1|RYK|SEC23IP|SEC62|SEPHS1|SEPT2|SEPT10|SHOC2|SLC30A5|SLK|SMC3|SON|SRSF10|SSB|SUCLG1|SUMO1|TFCP2|TMEM80|TRAK2|TRMT11|TSN|TWF1|UNC50|USP1|VPS26A|XRCC5|ZC3H15|ZDHHC17
VECCHI_GASTRIC_CANCER_EARLY_UP	0		9.65552783366e-05	13	0.000193007164792	ABHD12|ASCL2|AURKA|CSE1L|GSS|IDH3B|ITPA|NOP56|PFDN4|PSMA7|RPS21|SNRPB|SNX5	56	1.03391881144e-07	ABHD10|ADAT2|AIFM2|ANLN|ARL5B|BMS1|BUB1|BUB3|C12ORF10|CCNB1|CD9|CDK1|CENPA|CENPH|CENPK|CENPW|CEP55|CSTF3|DEPDC1|DEPDC1B|DHFR|ECT2|FANCD2|FAR2|FOXM1|GTPBP4|HMMR|HSPE1|KCNE3|KIF15|KIF18B|KIF20A|MCM10|MKI67|MRPS10|MRPS16|MTFR2|NAA25|NCBP2|NDC80|PARPBP|PCBD1|PDSS1|PTTG1|RACGAP1|RAD51AP1|RAD54B|RBM19|RRM2|SFR1|SGO2|SMC4|STAMBPL1|TTK|ZNF511|ZWINT
